About Chandra Archive Proposer Instruments & Calibration Newsletters Data Analysis HelpDesk Calibration Database NASA Archives & Centers Chandra Science Links

Skip the navigation links
Search In:   
Last modified: 14 December 2007
Hardcopy (PDF): A4 | Letter

Characterizing the Spatial Distribution of Elements in Groups and Clusters


Contents



1. Thread Overview

Please note that, while Sherpa 4.0 Beta was released in December 2007, this thread uses Sherpa 3.4 versions of tools and calculated values based on Cycle 10 effective area curves. If you have any questions about the results you get by following this thread, please contact the HelpDesk.

Groups of galaxies are X-ray sources. The origin of the X-ray emission is thermal emission from hot gas. The gas is known from ROSAT observations to be an optically thin plasma with a temperature of about 1keV, with the flux dominated by emission lines from Fe, Ni, O, Si, Mg and S. In this thread, we consider a proposal to determine the spatial distribution of these elements in the group SS2b153. This target was chosen because of its high X-ray luminosity, and because a substantial fraction of the cluster will fit into the ACIS-S array.

Our observational goal is to determine the Fe abundance to about 10% in 6 spatial regions.



2. Preliminary Considerations

  • You need to have CIAO installed. See the CIAO download page for more information.
  • Download the Cycle 10 instrument responses. These are provided for proposal purposes only; THEY SHOULD NOT BE USED FOR DATA ANALYSIS. Since this is an extended source, we choose responses for a point 2 arcminutes off axis. You will need to download the following files: aciss_2am_cy10.rmf, aciss_2am_cy10.arf, acisi_2am_cy10.rmf, and acisi_2am_cy10.arf.
  • Check for previous observations of SS2b153 using WebChaser. This target was approved for 31 ks in Cycle 3. Additional observations need to be justified.
  • Check that the pitch angle of this target is within the allowed range (POG Section 3.3.2). This can be done using the WWW version of ObsVis .
  • Check for other bright sources in the field of view using the Observation Visualizer. The ObsVis tool is available both on the web and through a command-line interface in the Proposal toolkit, which is packaged with CIAO. The J2000 coordinates for SS2b153 are: RA=10 50 26.9, Dec=-12 50 26.0.
  • The "Simulating an ACIS Spectrum for an On-axis Point Source, Including Pileup" thread gives detailed instructions on how to simulate an ACIS spectrum for proposal purposes. See also the CIAO FAKEIT thread.


3. Estimate Count Rate and Perform Spectral Simulations

In this section, we estimate the total count rate expected from SS2b153 in both ACIS-S and ACIS-I. We will then perform simple spectral simulations to decide the following:
  • Which detector (ACIS-I or ACIS-S) is best for determining abundances. Note that the result of this calculation is only one factor we will consider when selecting which CCDs to use; this is discussed further below.
  • How many counts are necessary to constrain the Fe abundance to better than 10% in a single extraction region. The number of counts required from each region plus the number of regions we divide our group into will set the overall exposure time.

Estimate Total Count Rate

Use COLDEN to estimate the galactic line-of-sight NH to SS2b153. Here we use the coordinates RA=10 50 26.9, Dec=-12 50 26.0 (J2000). The resulting nH returned by COLDEN is 4.50E20.

SS2b153 has a ROSAT PSPC count rate of about 0.28 counts/sec. We assume an optically thin plasma model, temperature 1keV=1.16E7K. To get the predicted ACIS-S count-rate, run PIMMS with the following inputs.

Input Count Rate
Input Mission -- ROSAT
Input Detector/Grating/Filter -- PSPC/None/OPEN
Energy Input -- default
Output Count Rate
Output Mission -- Chandra Cycle 10
Output Detector/Grating/Filter -- ACIS-S/None/None
Output Energy -- default
Model -- Raymond Smith
NH -- 4.5E20
Abundance -- 0.2
Log T -- 7.05
Count Rate -- 0.28

PIMMS gives an estimated ACIS-S count rate of 0.846 counts/sec.

Repeat the command with ``Output Detector/Grating/Filter'' set to ``ACIS-I/None/None'' to get an estimated ACIS-I count rate of 0.491 counts/sec.


ACIS-S Simulations

In this section, we use sherpa to simulate spectra. For a more detailed explanation of how to use sherpa to simulate spectra, please see the "ACIS Spectrum" thread, and the CIAO FAKEIT thread. The series of sherpa commands below performs the following functions.
  • Defines a response ``aciss'' consisting of the redistribution matrix aciss_2am_cy10.rmf and the area response file aciss_2am_cy10.arf.
  • Defines the instrument response for dataset 1 to be aciss.
  • Defines a model ``gabs'' for galactic line-of-sight absorption.
  • Defines a model ``vmek'' for the target. The source for this model is the XSPEC model ``vmekal'', or variable mekal (the plasma code is based on the calculations of Mewe, Kaastra and Liedahl). This version of the model allows individual abundances to be set. Here we initially set all abundances to 30% of solar.
  • Sets the model for dataset 1 to be galactic absorption x mekal plasma.
  • Sets the exposure time to be 7 ks and runs fakeit to generate a fake spectrum. Note that 7 ks is a guess at this point. We may need to refine the exposure time to obtain enough counts to measure the Fe abundance to 10%.
sherpa> rsp[aciss](aciss_2am_cy10.rmf,aciss_2am_cy10.arf)
The inferred file type is ARF.  If this is not what you want, please 
specify the type explicitly in the data command.
sherpa> instrument 1 = aciss
sherpa> xswabs[gabs]
gabs.nH parameter value [0.1] 0.045
sherpa> xsvmekal[vmek]
vmek.kT parameter value [1] 
vmek.nH parameter value [1] 0.001
vmek.He parameter value [1] 0.3
vmek.C parameter value [1] 0.3
vmek.N parameter value [1] 0.3
vmek.O parameter value [1] 0.3
vmek.Ne parameter value [1] 0.3
vmek.Na parameter value [1] 0.3
vmek.Mg parameter value [1] 0.3
vmek.Al parameter value [1] 0.3
vmek.Si parameter value [1] 0.3
vmek.S parameter value [1] 0.3
vmek.Ar parameter value [1] 0.3
vmek.Ca parameter value [1] 0.3
vmek.Fe parameter value [1] 0.3
vmek.Ni parameter value [1] 0.3
vmek.redshift parameter value [0] 0.0153
vmek.Switch parameter value [1] 
vmek.norm parameter value [1] 
sherpa> source 1=gabs*vmek
sherpa> fakeit time=7000
sherpa> fakeit

Now we need to adjust the normalization so that the count rate in the fake spectrum is the observed count rate for SS2b153. To do this, we need the count rate in the fake spectrum:

sherpa> show

Optimization Method: Levenberg-Marquardt
Statistic:           Chi-Squared Gehrels

-----------------
Input data files:
-----------------
Data 1: fake pha.
Total Size: 1024 bins (or pixels)
Dimensions: 1
Total counts (or values):    1.391507e+06
Exposure: 7000 sec
Count rate: 198.787 cts/sec


---- output truncated ----

The count rate in the fake spectrum is 198.787 counts/sec. The predicted ACIS-S count rate is 0.846 counts/sec. We therefore need to set the normalization for model ``vmek'' to be 0.846/198.787=0.00426, and run fakeit again.

sherpa> vmek.norm=0.00426
sherpa> fakeit
sherpa> show
-----------------
Input data files:
-----------------

Data 1: fake pha.
Total Size: 1024 bins (or pixels)
Dimensions: 1
Total counts (or values): 5807
Exposure: 7000 sec
Count rate: 0.830 cts/sec

---- output truncated ----

This observation will yield 7000*0.830, or ~5810 counts.

Next, we need to determine whether 5810 counts is enough to measure the Fe abundance to 10%. Freeze the galactic absorption, thaw the Fe abundance, fit the fake spectrum, and obtain the 1-sigma uncertainties:

sherpa> freeze gabs.nh
sherpa> thaw vmek.Fe
sherpa> fit
sherpa> sherpa.cov.sigma=1
sherpa> set_verbose(2)
sherpa> covariance
Information Matrix (Second Derivatives of Fit Statistic): 

   vmek.kT         vmek.Fe         vmek.norm    
          9642.5        -7793.91         -843170
        -7793.91         14683.5     1.83807e+06
         -843170     1.83807e+06     2.91155e+08

Eigenvectors (Principal Axes) of the Covariance Matrix: 

   vmek.kT         vmek.Fe         vmek.norm    
         0.90566        0.423995     -0.00289601
       -0.423972        0.905653      0.00631297
      0.00529945     -0.00448958        0.999976

Eigenvalues of the Covariance Matrix: 

     0.000119656     0.000520068     3.43444e-09

Covariance Matrix (Inverse of Information Matrix): 

   vmek.kT         vmek.Fe         vmek.norm    
     0.000191638     0.000153758    -4.15703e-07
     0.000153758     0.000448072    -2.38342e-06
    -4.15703e-07    -2.38342e-06     1.72774e-08

Covariance Matrix Determinant (Product of Eigenvalues): 2.13722e-16


Computed for sherpa.cov.sigma = 1
        --------------------------------------------------------
        Parameter Name      Best-Fit Lower Bound     Upper Bound
        --------------------------------------------------------
          vmek.kT           0.988668  -0.0138433      +0.0138433    
          vmek.Fe           0.335748  -0.0211677      +0.0211677    
          vmek.norm       0.00384965  -0.000131443    +0.000131443  

The measured Fe abundances will be 0.336 +/- 0.021 solar. This simulation shows that with about 5810 counts, it is possible with ACIS-S to constrain the Fe abundance within 10%.


ACIS-I Simulations

Now we need to repeat the simulations with ACIS-I. If you skipped the previous section, you can run the simulation by reading in the ACIS-I responses and following the steps exactly as for ACIS-S. If you have followed the thread to this point, you can fake a second dataset with the ACIS-I responses. The commands below perform the following functions.
  • Defines a new set of responses called ``acisi''.
  • Sets the responses for dataset 2 to ``acisi''.
  • Resets the values of Fe, vmek normalization, and temperature to their original values.
  • Sets the model for dataset 2 to be ``vmek'' convolved with galactic absorption.
  • Defines the exposure time for the second dataset to be 7 ks and runs fakeit to generate a fake spectrum.
sherpa> rsp[acisi](acisi_2am_cy10.rmf,acisi_2am_cy10.arf)
The inferred file type is ARF.  If this is not what you want, please 
specify the type explicitly in the data command.
sherpa> instrument 2=acisi
sherpa> vmek.Fe=0.3
sherpa> vmek.norm=1.0
sherpa> vmek.kT=1.0
sherpa> source 2=gabs*vmek
sherpa> fakeit 2 time=7000
sherpa> fakeit 2
sherpa> show

----output truncated----

Data 2: fake pha.
Total Size: 1024 bins (or pixels)
Dimensions: 1
Total counts (or values): 829576
Exposure: 7000 sec
Count rate: 118.511 cts/sec

----output truncated----

Next, adjust the normalization of vmek so that the count rate in fake data file 2 becomes 0.491 counts/sec (which was obtained from PIMMS). Then fit the fake spectrum and obtain the uncertainties:

sherpa> vmek.norm=0.00414
sherpa> fakeit 2 
sherpa> show

----output truncated----

Data 2: fake pha.
Total Size: 1024 bins (or pixels)
Dimensions: 1
Total counts (or values): 3352
Exposure: 7000 sec
Count rate: 0.479 cts/sec

----output truncated----

sherpa> fit 2 
sherpa> covariance 2 

----output truncated----
Computed for sherpa.cov.sigma = 1
        --------------------------------------------------------
        Parameter Name      Best-Fit Lower Bound     Upper Bound
        --------------------------------------------------------
          vmek.kT            1.00599  -0.0199983      +0.0199983    
          vmek.Fe           0.329407  -0.0334598      +0.0334598    
          vmek.norm       0.00374149  -0.000207821    +0.000207821  

 

We find that the constraints on the Fe abundance obtained with ACIS-S are slightly better than with ACIS-I, for the same exposure time. However, it is possible to show that the constraints on the Fe abundance can be improved by increasing the exposure time for ACIS-I so that the total number of counts is the same as for ACIS-S. This is not demonstrated explicitly here, but is left as an exercise for the reader.


Determine Total Exposure Time

From the above simulations we know that we need about 5810 counts to get the required constraint on the Fe abundance in a single region. Our goal is to measure abundances in 6 regions, which can be of varying size. Since the spatial distribution isn't well known, we assume that each region will produce the same count rate and that we will need a total of 34860 counts from the entire group to determine the Fe abundances in the 6 regions. This implies a total ACIS-S exposure time of approximately 42 ks and an ACIS-I exposure time of approximately 73 ks.


What About Background?

The above simulations do not include the effect of background which, in this case, is dominated by the diffuse X-ray background. The POG Table 6.9 gives background rates for ACIS-S positioned at the aimpoint. Assuming we are using chip S3 with an exposure time of 42 ks and the default energy range of 0.3-10 keV, the number of background counts is 1.18 counts/sec/chip * 42,000 sec = 49560 counts. The total background depends on the size of the region that the counts are extracted from. The chip is 1024*1024 pixels. If our smallest region is 100x100 pixels, then the total number of background counts inthis region 100^2/1024^2 * 49560, or about 473 counts.

The background counts must be subtracted from the source counts; the uncertainty in the background is only 17 counts. If we extract counts from a region 10 times larger, then the uncertainly in the background rises to about 53 counts. This is still small compared to our 5810 source counts. These are ``worst case'' estimates, since (1) the S3 chip has a high background relative to other chips and (2) if we use VF telemetry format we can further reduce the background by using the "clean55" algorithm developed by Alexey Vikhlinin to eliminate charged particles; this is now incorporated into the CIAO tool acis_process_events (see http://cxc.harvard.edu/ciao/threads/aciscleanvf for more information). The POG (Section 6.13.1) provides a detailed description of ACIS telemetry formats. For this observation, we do not expect background to be a problem in our analysis.


Summary of Simulations

We have performed a simple simulation to determine the number of counts required to constrain the Fe abundance to better than 10%. We find that about 5810 counts are required to do this in both the ACIS-I and ACIS-S detectors. We therefore conclude that for the purpose of measuring Fe abundance either array will do. If we choose ACIS-I we will need a higher total exposure time. The cosmic X-ray background will not impact our analysis if we have a minimum of 5810 extracted counts.



4. Select Instrument Configuration

ACIS-I or ACIS-S?

Both arrays have advantages and disadvantages for this observation. As described above, ACIS-I or ACIS-S could be used to constrain the Fe abundance within our goal, although the exposure time for ACIS-I will be longer. ACIS-I has a larger field of view and lower background than ACIS-S, but suffers from the disadvantage of degraded CTI (see the POG Section 6.7). The main result of degraded CTI is that the spectral resolution is position dependent, which can complicate analysis. Since the higher background in S3 should not impact our analysis, we choose ACIS-S to avoid CTI complications.


Exposure Mode, Telemetry Format, Choice of Chips and Optional Chips

There are only two ACIS modes available: Timed Exposure (TE) and Continuous Clocking (CC). TE mode is appropriate for imaging observations. There are three telemetry formats available for TE mode; Faint, Graded, and Very Faint. Very Faint format provides pixel values in a 5x5 island around the event position; less information is telemetered in the other two formats. The extra information provided by the Very Faint format can be used to reduce the number of background photons by using a screening algorithm. Since we are extracting spectra from large areas of the chip, Very Faint format is our best choice.

The chips most commonly used for ACIS-S imaging are S1-S4, I2, and I3. In order to reduce the probability of telemetry saturation, we choose to turn off chip S4. The telemetry saturation limit is less for Very Faint than for the Faint and Graded formats. As long as we do not exceed the telemetry limit, we would prefer to use Very Faint format because of the detailed information provided for each event.

The telemetry saturation limit for Very Faint mode is 68.8 cts/sec. From the POG Table 6.10, the background rates for the on chips are: S2: 9.7 cts/s and S3: 13.5 cts/s. So the total background rate is 23.2 cts/s. If we add the source count rate of 0.83 cts/s to the background rate, a good estimate for the maximum total count rate is 24.03 cts/sec. This is significantly less than the saturation limit, so we can safely choose VF format.

For Cycle 10, observers are being asked to identify "optional" chips. These chips can be turned off (without warning!) should the ACIS Power Supply and Mechanism Controller be in danger of overheating (see the ACIS chapter of the POG). We have already turned off chip S4 to avoid telemetry saturation. We now choose to designate I and I2 as optional because these are farthest from the aimpoint and have the worst PSF. I2 is designated O1 (first chip to be turned off) and I3 is designated O2 (second chip to be turned off).


Offset Pointing

The default ACIS-S aimpoint is close to the boundary between chips S3 and S2. This will put the peak of the group X-ray emission at the point of highest spatial resolution. This is shown here [Link to Image 1]. However, it will also put the outer edges of the group emission onto S2. We choose to move the peak X-ray emission into the CENTER of S3, thus minimizing overlap onto other chips. For SS2b153 this corresponds to a Y offset of -2 arcmin. This is shown here [Link to Image 2]. This has the slight disadvantage that the X-ray core will be moved away from the area of highest spatial resolution. Since we will be extracting spectra from a number of resolution elements, this is not a major concern.



5. Complete Target Form

For general instructions on how to submit a proposal, please see the "Using RPS to Prepare and Submit a Chandra Proposal" thread. The RPS target form should have the following parameter values for this observation. If a parameter isn't listed here, use the default RPS value or leave the field blank.

  • Target Name -- SS2b153
  • RA -- 10 50 26.9
  • Dec. -- -12 50 26.0
  • Y Detector Offset (arcmin) -- -2
  • Total Observing Time (ksec) -- 42
  • Count Rate -- 0.83
  • Total Field Count rate -- 5.65
  • Is target an extended source? -- Y
  • Exposure Mode -- TE
  • Event Telemetry Format -- Very Faint
  • CCDs On -- chips s1, S2, S3, I2, I3 should be checked Y
  • Optional Chips -- I2 designated O1, I3 as O2

Use this link to view the completed Target Form.



6. Thread Summary

In this thread, we design an observation to measure the spatial distribution of the Fe abundance in the galaxy group SS2b153. The goal is to measure the Fe abundance to better than 10% in about 6 spatial regions. We perform simple simulations to show that a total of 5810 counts in a single spatial region will constrain the Fe abundance to the required accuracy on either ACIS-I or ACIS-S. Emission from the X-ray background will not impact our analysis.

We choose to use ACIS-S in imaging mode for this observation to avoid problems due to CTI on the ACIS-I array. The total exposure time required to measure the Fe abundance in 6 regions is 42 ks. We choose TE mode and Very Faint telemetry format. Very Faint format has the advantage that it can be used to eliminate background photons; however, using this format could also result in telemetry saturation. We choose to turn off S4 to lower the probability of telemetry saturation. Finally, we offset the pointing direction by Y=-2 arcmin to center the group emission in the S3 chip.



History

15 Jan 2003 Initial Version
15 Dec 2003 Updated for Cycle 6
15 Dec 2004 Updated for Cycle 7
15 Dec 2005 Updated for Cycle 8
15 Dec 2006 Updated for Cycle 9
14 Dec 2007 Updated for Cycle 10

Return to Threads Page
Hardcopy (PDF): A4 | Letter
Last modified: 14 December 2007


The Chandra X-Ray Center (CXC) is operated for NASA by the Smithsonian Astrophysical Observatory.
60 Garden Street, Cambridge, MA 02138 USA.    Email: cxcweb@head.cfa.harvard.edu
Smithsonian Institution, Copyright © 1998-2004. All rights reserved.