Synopsis
Sample the fit statistic by taking the parameter values from a normal distribution.
Syntax
normal_sample(num=1, sigma=1, correlate=True, id=None, otherids=(), numcores=None) num - int, optional sigma - number, optional correlate - bool, optional id - int or str, optional otherids - sequence of int or str, optional numcores - optional
Description
For each iteration (sample), change the thawed parameters by drawing values from a uni- or multi-variate normal (Gaussian) distribution, and calculate the fit statistic.
Example
The model fit to the default data set has three free parameters. The median value of the statistic calculated by `normal_sample` is returned:
>>> ans = normal_sample(num=10000) >>> ans.shape (1000, 4) >>> np.median(ans[:,0]) 119.82959326927781
PARAMETERS
The parameters for this function are:
| Parameter | Definition |
|---|---|
| num | The number of samples to use (default is 1). |
| sigma | The width of the normal distribution (the default is 1). |
| correlate | Should a multi-variate normal be used, with parameters set by the covariance matrix ( True ) or should a uni-variate normal be used ( False )? |
| id | The data set that provides the data. If not given then all data sets with an associated model are used simultaneously. |
| otherids | Other data sets to use in the calculation. |
| numcores | The number of CPU cores to use. The default is to use all the cores on the machine. |
Return value
The return value from this function is:
A NumPy array table with the first column representing the statistic and later columns the parameters used.
Notes
All thawed model parameters are sampled from the Gaussian distribution, where the mean is set as the best-fit parameter value and the variance is determined by the diagonal elements of the covariance matrix. The multi-variate Gaussian is assumed by default for correlated parameters, using the off-diagonal elements of the covariance matrix.
Bugs
See the bugs pages on the Sherpa website for an up-to-date listing of known bugs.
See Also
- contrib
- get_data_prof, get_data_prof_prefs, get_delchi_prof, get_delchi_prof_prefs, get_fit_prof, get_model_prof, get_model_prof_prefs, get_resid_prof, get_resid_prof_prefs, get_source_prof, get_source_prof_prefs, plot_chart_spectrum, plot_marx_spectrum, prof_data, prof_delchi, prof_fit, prof_fit_delchi, prof_fit_resid, prof_model, prof_resid, prof_source
- data
- get_arf_plot, get_bkg_chisqr_plot, get_bkg_delchi_plot, get_bkg_fit_plot, get_bkg_model_plot, get_bkg_plot, get_bkg_ratio_plot, get_bkg_resid_plot, get_bkg_source_plot
- info
- list_model_ids, show_bkg_model, show_bkg_source
- modeling
- add_model, add_user_pars, clean, create_model_component, delete_bkg_model, delete_model, delete_model_component, get_model, get_model_autoassign_func, get_model_component, get_model_component_image, get_model_component_plot, get_model_plot, get_num_par, get_num_par_frozen, get_num_par_thawed, get_order_plot, get_par, get_pileup_model, get_source, get_source_component_image, get_source_component_plot, get_source_contour, get_source_image, get_source_plot, get_xsabund, get_xscosmo, get_xsxsect, get_xsxset, image_model, image_model_component, image_source, image_source_component, integrate, link, load_table_model, load_template_interpolator, load_template_model, load_user_model, reset, save_model, save_source, set_bkg_model, set_bkg_source, set_full_model, set_model, set_model_autoassign_func, set_pileup_model, set_source, set_xsabund, set_xscosmo, set_xsxsect, set_xsxset, t_sample, uniform_sample
- plotting
- get_cdf_plot, get_energy_flux_hist, get_pdf_plot, get_photon_flux_hist, get_pvalue_plot, get_pvalue_results, get_split_plot, plot, plot_arf, plot_bkg, plot_bkg_chisqr, plot_bkg_delchi, plot_bkg_fit, plot_bkg_fit_delchi, plot_bkg_fit_resid, plot_bkg_model, plot_bkg_ratio, plot_bkg_resid, plot_bkg_source, plot_cdf, plot_chisqr, plot_data, plot_delchi, plot_energy_flux, plot_fit, plot_fit_delchi, plot_fit_resid, plot_model, plot_model_component, plot_order, plot_pdf, plot_photon_flux, plot_pvalue, plot_ratio, plot_resid, plot_scatter, plot_source, plot_source_component, plot_trace, set_xlinear, set_xlog, set_ylinear, set_ylog
- psfs
- delete_psf, load_conv, plot_kernel
- saving
- save_delchi, save_resid
- statistics
- get_chisqr_plot, get_delchi_plot
- utilities
- calc_chisqr, calc_energy_flux, calc_model_sum, calc_photon_flux, calc_source_sum, calc_stat, eqwidth
- visualization
- contour_model, contour_ratio, contour_resid